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Stefan Rödiger

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Stefan Rödiger

@pangolin@sandbox.openscience.network

Prof. & Researcher focused on #Bioanalytics, #Bioinformatics, #Pharma, Human #diagnostics (#LiquidBiopsy) and a bit #Forensics

Website
www.b-tu.de/en/fg-multiparameterdiagnostik/rg-roediger
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RoedigerRG

RoedigerRG

@RoedigerRG@social.anoxinon.de
0000-0002-1441-6512
Current Institution: Brandenburg University of Technology Cottbus-Senftenberg
Past institutions: University of Potsdam , University of Surrey , Faculty of Public Health , Brandenburg University of Technology Cottbus-Senftenberg , Frankfurt University of Applied Sciences , Technical University of Munich , Charité - Universitätsmedizin Berlin
Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
RKWard: A Comprehensive Graphical User Interface and Integrated Development Environment for Statistical Analysis with R
| Journal of Statistical Software
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
De Gruyter Brill

The CytoBead assay – a novel approach of multiparametric autoantibody analysis in the diagnostics of systemic autoimmune diseases

If there is a suspicion of a systemic autoimmune disease, a two-step assessment of autoantibodies (AAb) is recommended for the serological diagnosis thereof. First, AAb will be determined using sensitive, cell-based indirect immunofluorescence. Then, a positive result must be confirmed with a more specific test due to the possibility of false-positive results. This gradual approach is necessary because there is currently no assay technique that fulfills the requirements for a one-stage procedure for sensitivity and specificity. For effective AAb analysis, simultaneous determination of several AAb with multiparametric confirmatory assays significantly shortens serological diagnosis, compared with conventional monoparametric testing. Yet, currently available multiparametric AAb detection techniques do not offer the combination of screening and confirmatory testing. Thus, a new approach based on digital fluorescence was developed by applying a novel CytoBead technology that is presented here. The aim was to combine the recommended stepwise approach consisting of sensitive screening and confirmation of specific diagnosis in a reaction environment and thereafter the possibility of adaptation to the serological diagnosis of several autoimmune diseases. Using standard microscopic glass slides and the combination of native cellular or tissue substrates with autoantigen-loaded fluorescent microparticles (beads) in a reaction environment, along with the possibility of manual and automatic evaluation by IIF and the quantitative measurement of fluorescent signals, the disadvantages of currently existing test systems could be overcome. This novel concept is applicable for the determination of various multiparametric AAb, e.g., the determination of antinuclear antibodies and the corresponding AAb in molecular cytoplasmic and nuclear autoantigenic structures. Further, this becomes the basis for the simultaneous multiparametric AAb determination for the serology of celiac disease or ANCA-associated vasculitides.
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
SpringerLink

A Highly Versatile Microscope Imaging Technology Platform for the Multiplex Real-Time Detection of Biomolecules and Autoimmune Antibodies

The analysis of different biomolecules is of prime importance for life science research and medical diagnostics. Due to the discovery of new molecules and new emerging bioanalytical problems, there is an ongoing demand for a technology platform that provides a broad...
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
SpringerLink

Nucleic acid detection based on the use of microbeads: a review - Microchimica Acta

Microbead-based technologies represent elegant and versatile approaches for highly parallelized quantitative multiparameter assays. They also form the basis of various techniques for detection and quantification of nucleic acids and proteins. Nucleic acid-based methods include hybridization assays, solid-phase PCR, sequencing, and trapping assays. Microbead assays have been improved in the past decades and are now important tools in routine and point-of-care diagnostics as well as in life science. Its advances include low costs, low workload, high speed and high-throughput automation. The potential of microbead-based assays therefore is apparent, and commercial applications can be found in the detection and discrimination of single nucleotide polymorphism, of pathogens, and in trapping assays. This review provides an overview on microbead-based platforms for biosensing with a main focus on nucleic acid detection (including amplification strategies and on selected probe systems using fluorescent labeling). Specific sections cover chemical properties of microbeads, the coupling of targets onto solid surfaces, microbead probe systems (mainly oligonucleotide probes), microbead detection schemes (with subsections on suspension arrays, microfluidic devices, and immobilized microbeads), quantification of nucleic acids, PCR in solution and the detection of amplicons, and methods for solid-phase amplification. We discuss selected trends such as microbead-coupled amplification, heterogeneous and homogenous DNA hybridization assays, real-time assays, melting curve analysis, and digital microbead assays. We finally discuss the relevance and trends of the methods in terms of high-level multiplexed analysis and their potential in diagnosis and personalized medicine. Contains 211 references.
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
BioMed Central

Increased proteasome activator 28 gamma (PA28γ) levels are unspecific but correlate with disease activity in rheumatoid arthritis - BMC Musculoskeletal Disorders

Background PA28γ (also known as Ki, REG gamma, PMSE3), a member of the ubiquitin-and ATP-independent proteasome activator family 11S, has been proved to show proteasome-dependent and -independent effects on several proteins including tumor suppressor p53, cyclin-dependent kinase inhibitor p21 and steroid receptor co-activator 3 (SCR-3). Interestingly, PA28γ is overexpressed in pathological tissue of various cancers affecting e. g. breast, bowl and thyroids. Furthermore, anti-PA28γ autoantibodies have been linked to several autoimmune disorders. The aim of this study was to develop and evaluate a novel and sensitive PA28γ sandwich ELISA for the quantification of PA28γ serum levels in patients with cancer and autoimmune diseases for diagnostic and prognostic purposes. Methods PA28γ-specific polyclonal antibodies and recombinant His-tagged PA28γ were purified and used to develop a sandwich ELISA for the detection of circulating PA28γ. With this new assay, PA28γ serum levels of patients with various cancers, rheumatoid arthritis (RA), Sjögren’s syndrome (SS), adult-onset Still’s disease (AOSD) and different connective-tissue diseases (CTD) were compared with healthy control subjects. Anti-PA28γ autoantibodies were additionally confirmed using a newly developed microbead assay. Results The developed PA28γ sandwich ELISA showed a high specificity with a detection limit of 3 ng/ml. A significant up-regulation of circulating PA28γ was detected in the sera of patients with cancer, RA, SS and CTD. A significant correlation was observed dependent on age as well as anti-PA28γ autoantibody levels with circulating PA28γ protein levels. Furthermore, PA28γ serum levels showed a correlation with disease activity in patients with RA under treatment with the T-cell directed biological compound abatacept according to disease activity score 28 (DAS28) and erythrocyte sedimentation rate (ESR). Conclusion The application of PA28γ as a novel biomarker for diagnostic purposes of a specific disease is limited, since elevated levels were observed in different disorders. However, the correlation with disease activity in patients with RA suggests a prognostic value, which needs to be addressed by further studies. Therefore our results show that PA28γ is a useful marker which should be included in studies related to novel treatments, e.g. abatacept.
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
http://gut.bmj.com/content/early/2014/07/29/gutjnl-2014-307854
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
Gut

Species-specific and pathotype-specific binding of bacteria to zymogen granule membrane glycoprotein 2 (GP2)

Dear Editor, With interest we read the paper by Juste et al 1 proposing the amount of zymogen-granule membrane glycoprotein 2 (GP2) on the surface of intestinal bacteria as a Crohn's disease (CD) marker. Indeed, a decreased GP2 level was found on microbes in patients with CD as compared to those of healthy controls. GP2 is a homologue to the urinary Tamm–Horsefall protein demonstrating an antimicrobial function by binding type 1-fimbriated uropathogenic Escherichia coli (UPEC). Likewise, GP2 seems to interact with intestinal bacteria as a specific receptor of bacterial type-1 fimbriae (FimH) on intestinal microfold cells that are partaking in immune responses against such microbes.2 GP2 is overexpressed in the inflamed intestine of patients with CD and has an immunomodulating role in innate and acquired immune responses.3 ,4 Interestingly, GP2 was identified as autoantigen of pancreatic antibodies in CD.4 Altogether, these findings indicate two major GP2 sources (pancreatic/intestinal) and support a role for GP2 in the interaction between the immune system and intestinal microbiota.3 Thus, loss of tolerance to GP2 could play a role in CD's pathophysiology supposed to be exacerbated by preceding intestinal infections. In general, the findings by Juste et al 1 may be explained by a lower pancreatic GP2 secretion, an impaired GP2 binding to bacteria, or by a higher prevalence of bacteria with poor or no GP2 binding in patients with CD. We have a longstanding interest in GP2's intestinal function and, therefore, we evaluated GP2 as receptor for intestinal bacterial pathotypes by testing the binding of 284 bacteria in a …
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
http://www.clinchem.org/content/61/2/379
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ScienceDirectScienceDirect

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
http://onlinelibrary.wiley.com/doi/10.1111/1462-2920.12807/abstract
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
R as an Environment for the Reproducible Analysis of DNA Amplification Experiments (PDF)
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
SpringerLink

Mikropartikelsysteme für die Nukleinsäurediagnostik - BIOspektrum

PCR is a simplistic and robust laboratory technology for nucleic acid detection. However, for research and diagnostics processing multiple targets within one reaction in an automatic fashion is a demanded feature. Combining two multiplex read out technologies, such as microarray and microbeads, the VideoScan platform was designed. This microscope imaging technology enables an automatable high throughput multiplex measurement of genetic material from biological and patient samples.
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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago

ORCID

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Stefan Rödiger
Stefan Rödiger
@pangolin  ·  activity timestamp 10 years ago
Object not found! (PDF)
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